Building Consensus around the Assessment and Interpretation of Symbiodiniaceae Diversity

by Sarah Davies, Matthew H. Gamache, Andrew Baker, Cheong Xin Chan, Jorg C. Frommlet, Christian Voolstra, Raquel Peixoto, Kate Quigley, James Reimer, David J. Suggett, Maren Ziegler, John E. Parkinson, Lauren Howe-Kerr, Nicola Kriefall, Anastazia Banaszak, Line Bay, Anthony Bellantuono, Debashish Bhattacharya, Danielle Claar, Mary Alice Coffroth, Ross Cunning, Simon Davy, Javier Del Campo, Erika Diaz-Almeyda, Lauren Fuess, Raul Gonzalez-Pech, Tamar Goulet, Kenneth Hoadley, Emily Howells, Benjamim Hume, Dustin Kemp, Carly Kenkel, Sheila Kitchen, Todd LaJeunesse, Lin Senjie, Shelby Mcllroy, Ryan McMinds, Matthew Nitschke, Clinton Oakley, Carlos Prada, Hollie Putnam, Hannah Reich, Mauricio Rodriguez-Lanetty, Stephanie Rosalas, Eugenia Sampayo, Scott Santos, Eiichi Shoguchi, Edward Smith, Michael Stat, Timothy Stephens, Marie Strader, Timothy Swain, Cawa Tran, Nikki Traylor-Knowles, Mark Warner, Virginia Weis, Rachel Wright, Tingting Xiang, Hiroshi Yamashita, Adrienne Correa, John E Parkinson
Scientific paper Year: 2022 DOI: 10.20944/preprints202206.0284.v1

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Within microeukaryotes, genetic and functional variation sometimes accumulate more quickly than morphological differences. To understand the evolutionary history and ecology of such lineages, it is key to examine diversity at multiple levels of organization. In the dinoflagellate family Symbiodiniaceae, which can form endosymbioses with cnidarians (e.g., corals, octocorals, sea anemones, jellies), other marine invertebrates (e.g., sponges, molluscs, flatworms), and protists (e.g., foraminifera), molecular data have been used extensively over the past three decades to describe phenotypes and to make evolutionary and ecological inferences. Despite advances in Symbiodiniaceae genomics, a lack of consensus among researchers with respect to interpreting genetic data has slowed progress in the field and acted as a barrier to reconciling observations. Here, we identify key challenges regarding the assessment and interpretation of Symbiodiniaceae genetic diversity across three levels: species, populations, and communities. We summarize areas of agreement and highlight techniques and approaches that are broadly accepted. In areas where debate remains, we identify unresolved issues and discuss technologies and approaches that can help to fill knowledge gaps related to genetic and phenotypic diversity. We also discuss ways to stimulate progress, in particular by fostering a more inclusive and collaborative research community. We hope that this perspective will inspire and accelerate coral reef science by serving as a resource to those designing experiments, publishing research, and applying for funding related to Symbiodiniaceae and their symbiotic partnerships.